ࡱ> ]_\Y R;bjbj[[2\9 \9 \8 8 8 $$  $"$"$"$"$"$"$$&)JF$EF$$ $ $0 X @wf#R:H  $$0$P ))X )X F$F$$)8 I : ^(uuirOo`f[ zYef['Y~ zW,gOo`Course Information  zNxCourse Code BI437*f[eCredit Hours 32*f[RCredits 2* zTyCourse Name -Ne ^(uuirOo`f[e Applied Bioinformatics z'`((Course Type)W{QRQ zc[aAudience u}Tf[b,gyuc(Language of Instruction)-Ne*_b|School u}Tyf[b/gf[bHQO zPrerequisite ecYe^Instructor 'kz[ zQ@W(Course Webpage)* z{NDescription -Ne300-500W[ +T z'`(0;NYef[Q[0 zYef[vhI{ ,g zNRP[uirf[0{:gb/gT~f[I{f[yNSƉ҉ f[`NuirOo`f[W,gelT^(u0N~(WWV~f[0lU_~f[Tˆ}v(~f[I{R~f[̀of N uirOo`f[8^(uv_>e]wQTpenc^0,g z\0N[Nuirf[:N;Ǹoff[uvwƋSO| .^Rf[uccSTRgNGSpencvW,gel0͑pN~Linuxd\O|~ RP[uirf[penc^ RP[uirf[]wQSEMBOSS,^Rk[]wQBLAST (W~uirOo`f[Rgs^SGALAXYS~f[]wQSRI{8^(u]wQvO(u0dkY NbN~]_Sv~̃WV~f[RgoNSpenc^:NO \(u~̃oWV4ls^lyI{wQSO[OU\:y~f[u YUO(uuirOo`f[velSxvz`eg㉳Qu}Tyf[̑v[E0Ng_Sf[u[u}Tyf[vxvztQ /TSf[uvrz`R0* z{NDescription Bioinformatics has become a basic skill in the post-genomic era. The NGS techniques, coupled with the rapidly growing methodologies of bioinformatics, are providing exciting opportunities for us to understand biological questions beyond previous imagination. Students from varied disciplines (e.g., microbiology, bioengineering and biotechnology) are becoming interested in big data mining. This course provides up-to-date and detailed information on various aspects of large-scale data analysis with applications to microbiology. The chapters include topics such as NGS techniques and reads assembly, gene finding and functional annotation, comparative analysis, phylogenetic analysis, RNA-seq and more. It describes a number of different useful freely available tools and database, makes links to some wet-lab techniques, explains different approaches to tackle a problem, talks about frequently used bioinformatics tools including EMBOSS, BLAST and R. zYef['Y~course syllabus *f[`Nvh(Learning Outcomes)ccW@xSf[0uir[d\O0{:g(WuirSvsQf[yWv^(uI{W,gb (uirb/gNNA5.2 )0|~0Wccuirf[0] zf[NSvsQNNvW,g[elNbwQ g[TR [agNvRYR_~0tet0Rg[~g0dQf[/geTSNf[/gNAm (uir] zNNB10)wQ g[vpef[0uirf[T{:gf[yv~T }{QTR (uirOo`f[NNC7)0*Yef[Q[0ۏ^[cSBl(Class Schedul TX`d|~     $ P T \ ^ x z    ǽǶǬ謽裬裘萈萈hWp9hjIo(hWp9hWp9o(hjICJPJ^Jo(hjICJaJo(hjIB* o(phPhjIRHZo(hjIB*o(ph hjIRHZhjIB* RHZo(phPhjIB* RHZphP hjIo(hjIhjI5CJ aJ hWp95CJ aJ o(5 VXb~ullfllll$If $$Ifa$pkd$$Iff;#&  044 lap $$Ifa$WD`$YD2a$  0kd$$If/ֈ; }BY#f 044 la$If $$Ifa$    R ukdQ$$If40;#f ^044 la $$Ifa$R T ^ z u $$Ifa$gdWp9 $$Ifa$ukd$$If40;# f ^044 la v $$Ifa$gdWp9 $$Ifa$skdc$$If0;#f ^044 la  {o $$Ifa$gdWp9 $$Ifa$ $$Ifa$qkd$$If0;#f ^044 la   " 4 x $$Ifa$gdWp9 $$Ifa$qkdg$$If0;#f ^044 la  " > @ \ ^ ` d l n 0;,.24bd444 4"4$4,4.42444<4Uh&hjIaJo(hjIB*o(ph hjIaJhjIaJo( h&hjIh&hjIo(hjIRHZo(hjIB*o(phhjIB* phPhjIB* o(phP hjIo(hjI@4 6 @ ^ b x $$Ifa$gdWp9 $$Ifa$qkd$$If0;#f ^044 lab d n $$Ifa$qkdg$$If0;#f ^044 la * e\VDDdh$G$H$IfWD`$If $$Ifa$kd$$If\;}#f  /I 0 44 lavvv $IfWD` $$Ifa$skd$$If0;#f ^044 la0$Ifskd $$Ifa0;#f ^044 la02dx||| & F$If $$Ifa$pkd$$If-;#&  044 lap 4$4.444>4J4T4^4ttttlt$IfK$ $$Ifa$K$ $d4$Ifa$skd3$$If)0;#f ^044 la e& Requirements)Yef[Q[f[eYef[e_\ONSBlW,gBlge_,{Nz ~ 2X-,{Nz {NuirOo`f[vNuNSU\-,{Nz 8^(ud\O|~S{N4X\ON1. 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